[Dock-fans] Dock6: Command not found

[Sudipto Mukherjee]

Aidan,

This is because the dock6 binary is not in your current path. Add the dock6/bin directory to your path (doing so in your .bash_profile or .bashrc is a good idea) and you should be able to run dock without any problems. Otherwise, simply provide the full path when you are executing dock.
For example,
/home/aidan/dock6/bin/dock6 -i rigid.in
 
Regards
Sudipto Mukherjee
Graduate Student, Robert C. Rizzo Lab
Dept. of Applied Math & Statistics, Stony Brook University

----- Original Message ----
From: Aidan Kiely <axkiely at gmail.com>
To: dock-fans at docking.org
Sent: Tuesday, August 7, 2007 8:13:36 PM
Subject: [Dock-fans] Dock6: Command not found

Hi Dock Fans,

 

This may seem a daft question, but Im not sure where to turn. Ive RTFM, browsed the mailing list archives and searched the 'net but it seems no-one has had this problem.

 

Ive attempted to install Dock6.1 on a windows machine running the latest version of Cygwin (full install). I follow the instructions for installation and it seems to work fine. Running the tests gets some "possible failures", but looking at the .dif files it looks as though they are small numerical differences ie i dont think they are major. 


 

However, when i attempt to run dock from a Cyqwin bash window (on tutorial files) using the command

 

dock6 -i rigid.in [-o rigid.out]

 

it gives me the error "bash dock6: command not found".

 

Can anyone point in me in the right direction?

 

Kind Regards,

 

 

Aidan Kiely

University of Auckland







       
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