[Dock-fans] grid too small error
Samantha Kaye
samantha.kaye at pharmacy.ac.uk
Wed Oct 31 02:48:59 PDT 2007
I keep getting a problem whilst trying to dock some molecules of
interest. The error suggests that the grid is too small to contain the
molecule, see below:
Elapsed time: 0 seconds
ERROR: Could not complete growth.
Confirm grid box is large enough to contain
ligand and try increasing max_orients.
1 Molecules Processed
Total elapsed time: 0 seconds
I have tried increasing max-orients and I have tried expanding the box
(in showbox) 25A (which presumably makes the grid larger). I also tried
using a tiny molecule as a test to see if it would dock. Nothing seems
to work.
This isn't the first time I've use Dock but I am fairly new to it so any
advice you can offer would be much appreciated.
Best wishes
Sam
--
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Dr Samantha Kaye
The School of Pharmacy
University of London
29-39 Brunswick Square
London
WC1N 1AX
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