[Dock-fans] Calcium problem with amber score

[John J. Irwin]

Hi Scott & Osmany

I've updated the way the search of the dock-fans archive is done on the page

http://dock.compbio.ucsf.edu/DOCK_6/index.htm

so now it should correctly search everything.

Scott Brozell wrote:
> Hi,
>
>   
>> On Thu, 18 Oct 2007, Osmany Guirola wrote:
>>
>> I am trying to use the amber score but i am having problems with
>> the prepare_amberize.pl script...my pdb file has a Ca ion and this is the error in the log file
>>
>> For atom: .R<CA 45>.A<CA 1> Could not find type: Ca
>> Parameter file was not saved.
>>         Quit
>>
>> of course my rec*.prmtop files have 0kb size
>> what can i do?
>>     
>
> Read these:
> http://blur.compbio.ucsf.edu/pipermail/dock-fans/2007-February/000896.html
> http://blur.compbio.ucsf.edu/pipermail/dock-fans/2007-May/001024.html
> http://blur.compbio.ucsf.edu/pipermail/dock-fans/2006-September/000723.html
>
> Note that searching the dock fans archives at 
> http://dock.compbio.ucsf.edu/DOCK_6/index.htm
> is currently missing some posts due to technical issues that
> we are trying to fix.
>
> Scott
>
>
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