[Dock-fans] dock installation
inderjit yadav
inderjitbioinfo at gmail.com
Tue Apr 8 22:48:42 PDT 2008
hello
please help me on dock installation on cluster .sir when I m installing
dock on cluster i m getting a lot of errors
At first I use ./configure gnu.parallel
it tell to define MPICH_HOME in the root directory of mpich2 i define it in
my mpich directory
1) then i do make dock command
it gives error that mpi.h not found in the dock6/src/dock
g++ -c -DBUILD_DOCK_WITH_MPI -DMPICH_IGNORE_CXX_SEEK -DMPICH_SKIP_MPICXX
-I/include -O2 -o base_mpi.o base_mpi.cpp
In file included from base_mpi.cpp:2:
base_mpi.h:11:19: mpi.h: No such file or directory
base_mpi.cpp: In member function `bool Base_MPI::initialize_mpi(int*,
char***)':
base_mpi.cpp:274: error: `MPI_Init' was not declared in this scope
base_mpi.cpp:275: error: `MPI_COMM_WORLD' was not declared in this scope
2) i make a symbolic link of it with mpi.h of mpich directory but now it is
sowing the errors in mpi.h like
make[1]: Entering directory `/home/inderjit/dock6/src/dock'
g++ -c -DBUILD_DOCK_WITH_MPI -DMPICH_IGNORE_CXX_SEEK -DMPICH_SKIP_MPICXX
-I/include -O2 -o base_mpi.o base_mpi.cpp
In file included from base_mpi.h:11,
from base_mpi.cpp:2:
mpi.h:230:21: mpidefs.h: No such file or directory
mpi.h:309:23: mpi_errno.h: No such file or directory
In file included from base_mpi.h:11,
from base_mpi.cpp:2:
mpi.h:319: error: `MPI_Status' has not been declared
mpi.h:319: error: ISO C++ forbids declaration of `parameter' with no type
mpi.h:320: error: `MPI_Status' was not declared in this scope
mpi.h:320: error: expected primary-expression before ',' token
base_mpi.cpp: In member function `bool Base_MPI::listen_for_request()':
base_mpi.cpp:414: error: `MPI_Status' was not declared in this scope
base_mpi.cpp:414: error: expected `;' before "status"
base_mpi.cpp:420: error: `status' was not declared in this scope
base_mpi.cpp: In member function `bool Base_MPI::send_queue_request()':
base_mpi.cpp:451: error: `MPI_Status' was not declared in this scope
3) earlier i get an error while making command
make utils
that yacc command not found
sir please help me in this
INDERJIT
CCSHAU HISAR
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