[Dock-fans] Which one I use in DOCK

[snoze pa]

Dear Dockers,

 I am trying to use DOCK for screening a list of ligand. I am using
following tutorial

http://dock.compbio.ucsf.edu/DOCK_6/tutorials/index.htm


I have a question!

1.Rigid and Flexible Ligand Docking and AMBER Score are different or  both
are part of the dock process.
2. If no, then which one is better

Is not clear from website which one perform better than other.

thanks in advance
s

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