[Dock-fans] why there are more than 99999 spheres?

[khanna06 at vt.edu]

Dear Guo,

Having too many spheres probably means that your receptor just has a large
surface area. I'm fairly new to biochemistry so maybe one of the more
knowledgeable members of this list could give you a better description. I ran
into the same problem while running a problem before. To fix your problem,
download the Sphgen_cpp from the Contributed Code section of the Dock website:

http://dock.compbio.ucsf.edu/Contributed_Code/index.htm

This is an improved version of Sphgen which can handle more than 99999 spheres.

Regards,

Sahil Khanna
Biochemistry 2010 Virginia Tech
http://bevanlab.biochem.vt.edu/


2008/1/14 &#24565; &#21016; < yolanda.only at yahoo.com.cn>:

    - Hide quoted text -
    Dear Dock Fans:

    I'm also a new student in dock.I tried dock with my receptor which has 385
residues.In first steps,it had no problem,but when running sphgen,there was an
error.It generated more than 99999 spheres,but I don't know why it has so
much.Is the receptor with 385 residues too big?
    Any answer is appreciated!

                                                                         
Yolanda Guo

   
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