[Dock-fans] amberize_receptor problem

[Alessandro Nascimento]

Are you running dock in linux? cygwin?

Can it be caused by case sensitivity ? CA != Ca ??

HTH,


--alessandro

On Jan 24, 2008 11:25 AM, Osmany Guirola <osmany_guirola at yahoo.com> wrote:

> Hi
> I am having problems trying to run the amberize_receptor script
> my PDB receptor has a Calcium ion  and the script gave me this error
>
> .....
> ....
> Building topology.
> Building atom parameters.
> For atom: .R<CA 45>.A<CA 1> Could not find type: Ca
> Parameter file was not saved.
>         Quit
>
> i check the log file  and the script loads the ions library
> Loading library: /home/osmany/progs/dock6/parameters/leap/lib/ions94.lib
> Loading: CA
> Loading: CIO
> Loading: Cl-
> Loading: Cs+
> Loading: IB
> Loading: K+
> Loading: Li+
> Loading: MG
> Loading: MG2
> Loading: Na+
> Loading: Rb+
> Loading: ZN
>
> What can i do?
>
> Thanks
>
> Osmany
>
>
>
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-- 
[ ]s

--alessandro
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