[Dock-fans] How to solve sphgen problem

[Scott Brozell]

Hi,

On Sun, 27 Jan 2008, Thomas Leonard wrote:

> I have some problem with sphgen where I could not generate spheres.
>    
>   The output is given here
>    
>   -desktop:~/progs/dock6/bin$ sphgen 
> bash: sphgen: command not found
> -desktop:~/progs/dock6/bin$ ./sphgen
> open: 'new' file exists
> apparent state: unit 6 named OUTSPH
> lately writing direct unformatted external IO
> Aborted (core dumped)

http://dock.compbio.ucsf.edu/DOCK_6/tutorials/sphere_generation/generating_spheres.htm
If sphgen has been run before then be sure to remove the output files (OUTSPH and rec.sph) prior to its next execution.

> -desktop:~/progs/dock6/bin$ ./sphgen
> open: No such file or directory
> apparent state: unit 4 named rec.ms
> lately reading sequential formatted external IO
> Aborted (core dumped)

This reads clearly: rec.ms does not exist or is not in the
correct directory; see the tutorial above.

Scott