[Dock-fans] Announcing: Release of DOCK 6.2

[Sudipto Mukherjee]

Dear Ben,

>1. 
Grid 
Reading 
Memory 
Efficiency: 
I 
am 
guessing 
the 
grid 
files 
themselves
>are 
the 
same 
but 
I 
want 
to 
verify 
that.  
Can 
I 
run 
dock6.2 
with 
grids 
I 
have
>generated 
with 
dock6.1, 
or 
do 
I 
need 
to 
regenerate 
them?  
 
 
The same grid files will still work. 

>2. 
Continuous 
Score 
Distance 
Dependent 
Dielectric 
Control: 
I 
am 
not 
sure
>what 
exactly 
was 
in 
Dock6.1; 
could 
you 
please 
give 
any 
reference 
to 
the
>dielectric 
function 
used 
in 
dock6.2 
(e.g. 
epsilon(r)=)?  
Or 
can 
I 
view 
its
>values 
in 
any 
of 
the 
dock6.2 
files?

All versions of Dock6 use 4r as the distance dependent dielectric.


Regards
Sudipto Mukherjee



      ____________________________________________________________________________________
Be a better friend, newshound, and 
know-it-all with Yahoo! Mobile.  Try it now.  http://mobile.yahoo.com/;_ylt=Ahu06i62sR8HDtDypao8Wcj9tAcJ 
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://blur.compbio.ucsf.edu/pipermail/dock-fans/attachments/20080306/8f38b37e/attachment.html