[Dock-fans] Error from amberize_complex; examine amberize_complex.1.out

[Scott Brozell]

On Wed, 12 Mar 2008, "Xin Hu [Contractor, Foreign National]" <xhu at bioanalysis.org>
> 
> I installed the Dock6.2 on a linux  (with configure gnu). After 
> compliation, I did
> the test according the manual, but got the error like that:
> 
> ==============================================================
> diffing secondary7_secondary_scored.mol2.save with 
> secondary7_secondary_scored.mol2
> PASSED
> ==============================================================
> make[2]: Leaving directory
> `/home/xhu/program/dock6/install/test/primary_secondary_score'
> cd amber_score_181l && make test
> make[2]: Entering directory 
> `/home/xhu/program/dock6/install/test/amber_score_181l'
> ../../../bin/prepare_amber.pl lig.mol2 181l.pdb
> Coordinate and parameter files for the Receptor 181l generated.
> The AMBER score tagged mol2 file lig.amber_score.mol2 generated.
> Splitting the multiple Ligand mol2 file into single mol2 files.
> The single mol2 files will have the prefix: lig
> Generating coordinate and parameter files with AM1-BCC charges.
> This may be time consuming.
> Ligand lig.1 has total charge 0
> Coordinate and parameter files for the Ligand lig.1 generated.
> 
> Error from amberize_complex; examine amberize_complex.1.out
> make[2]: *** [amberize] Error 2
> make[2]: Leaving directory 
> `/home/xhu/program/dock6/install/test/amber_score_181l'
> make[1]: *** [dock] Error 2

Did you examine amberize_complex.1.out ?

Scott