[Dock-fans] dms error

[Monisha Hajra]

Dear Nitin,
Yes, this is a common problem, and I know how to fix it.  Create a directory
/usr/local/lib/dms.

Now look in the original extracted files that you compiled from.  You will
see a file called radii.proto.  Copy this file to
/usr/local/lib/dms, and rename it to be just "radii" (i.e. take off the
.proto). Now try to run the program again.

hope this helps..



On Sat, Mar 1, 2008 at 1:39 AM, Nitin Bhardwaj <nbhardwaj at gmail.com> wrote:

> Dear Dock-fans,
>   I have been struggling for the past three days to just repeat the dock6
> tutorial. I am stuck at step 2 which is sphere generation. I have installed
> dms on four different machines and with the same rec_noH.pdb file as on the
> tutorial, I can not get dms to run. Everytime it gives me this increasingly
> frustrating message:
>
> 2317 atoms
>         S       11
>         O       444
>         N       389
>         C       1473
> execl: Not a directory
>
> Once again, this is with the exact same rec_noH.pdb file as in the
> tutorial. I should at least be able to repeat the tutorial. I am running dms
> only on my local machine.
>
> Any help would be highly appreciated.
> Thanks a lot in advance,
> Nitin
>
>
>
> _______________________________________________
> Dock-fans mailing list
> Dock-fans at docking.org
> http://blur.compbio.ucsf.edu/mailman/listinfo/dock-fans
>
>


-- 
Monisha Hajra
Senior Scientist

Institute Of Computational Biology (IOCB)
#1101, OTC Road, Near Corporation Circle
Bangalore -02, India

080-415 71426/27
www.iocbindia.org
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://blur.compbio.ucsf.edu/pipermail/dock-fans/attachments/20080314/acfa0147/attachment.html