[Dock-fans] execl: permission denied

[John J. Irwin]

Hi Teck

To avoid using ./ as a prefix to commands, you need to add . (dot) to 
your path. under c-shell, this could be

set path = ($path .)

The error is because the file

/home/tkmaan/Desktop/man/man1

cannot be created. Hmmmm. how could that be? I would investigate why 
that file cannot be created.

Good luck

John



Teck Maan wrote:
> Hi,
> I installed dms and tried to run rec_noH.pdb. but i got a
> execl:Permission denied error. I tried su, could not work either. the
> following is the error message.
>
> make install
> cd libpdb ; make OPT="-O"
> make[1]: Entering directory `/home/tkmaan/Desktop/dms/libpdb'
> cc -O    -c -o pdb_read.o pdb_read.c
> cc -O    -c -o pdb_sprntf.o pdb_sprntf.c
> cc -O    -c -o pdb_sscanf.o pdb_sscanf.c
> cc -O    -c -o pdb_write.o pdb_write.c
> cc -O    -c -o pdbrun.o pdbrun.c
> cc -O    -c -o ms.o ms.c
> ar cru libpdb.a pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o
> pdbrun.o ms.o
> ranlib libpdb.a
> make[1]: Leaving directory `/home/tkmaan/Desktop/dms/libpdb'
> cc -DDESTLIB=\"/home/tkmaan/Desktop/dms/\" -DSERVER_PATH=
> \"/home/tkmaan/Desktop/dms/dmsd\" -Ilibpdb -O   -c -o compute.o
> compute.c
> cc -DDESTLIB=\"/home/tkmaan/Desktop/dms/\" -DSERVER_PATH=
> \"/home/tkmaan/Desktop/dms/dmsd\" -Ilibpdb -O   -c -o fwritev.o
> fwritev.c
> cc -DDESTLIB=\"/home/tkmaan/Desktop/dms/\" -DSERVER_PATH=
> \"/home/tkmaan/Desktop/dms/dmsd\" -Ilibpdb -O   -c -o input.o input.c
> cc -DDESTLIB=\"/home/tkmaan/Desktop/dms/\" -DSERVER_PATH=
> \"/home/tkmaan/Desktop/dms/dmsd\" -Ilibpdb -O   -c -o ms.o ms.c
> cc -DDESTLIB=\"/home/tkmaan/Desktop/dms/\" -DSERVER_PATH=
> \"/home/tkmaan/Desktop/dms/dmsd\" -Ilibpdb -O   -c -o output.o output.c
> cc -DDESTLIB=\"/home/tkmaan/Desktop/dms/\" -DSERVER_PATH=
> \"/home/tkmaan/Desktop/dms/dmsd\" -Ilibpdb -O   -c -o emalloc.o
> emalloc.c
> cc -DDESTLIB=\"/home/tkmaan/Desktop/dms/\" -DSERVER_PATH=
> \"/home/tkmaan/Desktop/dms/dmsd\" -Ilibpdb -O   -c -o tokenize.o
> tokenize.c
> cc -Llibpdb -o dms compute.o fwritev.o input.o ms.o output.o emalloc.o
> tokenize.o -lpdb
> rm -f /home/tkmaan/Desktop/man/man1/dms.1
> cp dms.1 /home/tkmaan/Desktop/man/man1
> cp: cannot create regular file `/home/tkmaan/Desktop/man/man1': No such
> file or directory
> make: *** [maninstall] Error 1
> [root at localhost dms]# ./dms rec_noH.pdb -n -w 1.4 -v -o rec.ms
> 2317 atoms
>         S       11
>         O       444
>         N       389
>         C       1473
> execl: Permission denied
>
> Also, how do i run just run "dms" without having to "./" thanks.
>
> Teck Maan
>
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