[Dock-fans] execl: permission denied

[Eric Pettersen]

Hi Teck,
	You've duplicated the error described in this message:

http://shoichetlab.compbio.ucsf.edu/pipermail/dock-fans/2007-February/ 
000920.html

Basically, you can't edit the GNUmakefile to have the LIBDIR/BINDIR  
variables point to the same place where the source is.  You need to  
edit the GNUmakefile, change those variables, and recompile.

--Eric

On May 21, 2008, at 11:13 AM, Teck Maan wrote:

> Hi Eric,
> I checked my dmsd folder. It is there. It contains 7 items.
> 1. emalloc.c
> 2. freadv.c
> 3.GNUmakefile
> 4. lookat.c
> 5. server.c
> 6. test.pdb
> 7. viewat.c
>
> and the folder  /home/tkmaan/Desktop/dms, does exist. and i execute  
> the
> dms program using the following command: ./dms rec_noH.pdb -n -w  
> 1.4 -v
> -o rec.ms.  i am just stucked at execl line where the permission is
> denied. I tried su, same error. Any thought?
>
> Teck Maan
> On Tue, 2008-05-20 at 16:32 -0700, Eric Pettersen wrote:
>>> cc -DDESTLIB=\"/home/tkmaan/Desktop/dms/\" -DSERVER_PATH=
>>> \"/home/tkmaan/Desktop/dms/dmsd\" -Ilibpdb -O   -c -o tokenize.o
>>> tokenize.c
>>> cc -Llibpdb -o dms compute.o fwritev.o input.o ms.o output.o
>>> emalloc.o
>>> tokenize.o -lpdb
>>> rm -f /home/tkmaan/Desktop/man/man1/dms.1
>>> cp dms.1 /home/tkmaan/Desktop/man/man1
>>> cp: cannot create regular file `/home/tkmaan/Desktop/man/man1': No
>>> such
>>> file or directory
>>> make: *** [maninstall] Error 1
>>> [root at localhost dms]# ./dms rec_noH.pdb -n -w 1.4 -v -o rec.ms
>>> 2317 atoms
>>>         S       11
>>>         O       444
>>>         N       389
>>>         C       1473
>>> execl: Permission denied
>>
>> Hi Teck,
>> The error indicates that /home/tkmaan/Desktop/dms/dmsd cannot be
>> executed.  Check that the folder /home/tkmaan/Desktop/dms exists.
>>  Check that the file dmsd exists in that folder.  Check that the file
>> is executable.
>>
>>
>> --Eric
>>
>>
>>                         Eric Pettersen
>>
>>                         UCSF Computer Graphics Lab
>>
>>                         http://www.cgl.ucsf.edu
>>
>>
>>
>>
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>