[Dock-fans] Amber Deftn parameter file problem!!!!!!!

[Scott Brozell]

Hi,

On Fri, 23 May 2008, raghu bhagavat wrote:

> i am followin the on-line tutorials for dock6 using Chimera.......for the 1abe protein complex........
> i am havin an error during the grid stage with the amber parameter files.........the below file i am not able to get it..........the output in grid.out shows no file or directry by this name...........
> vdw_definition_file            ../../../parameters/vdw_AMBER_parm99.defn
> 
> how to get this file .......shud the amber be installed or is it inbuilt..........i am unable to proceed without this file :(.......

dock6/parameters/vdw_AMBER_parm99.defn
is distributed with DOCK.

http://blur.compbio.ucsf.edu/pipermail/dock-fans/2008-May/001613.html

Scott