[Dock-fans] Problems Installing dms

[Samuel Watson]

Hi,

I am trying to install dms on a Mac Os 10.4 system.  I have modified LIBDIR,
BINDIR in GNUmakefile and I also created new directories for man and
man/man1.  All of the new directories appear in my dms file (~/Desktop/dms).
When I then do "make install" I get the following output:

cc -O    -c -o pdbrun.o pdbrun.c
cc -O    -c -o ms.o ms.c
ar cru libpdb.a pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o pdbrun.o
ms.o
ranlib libpdb.a
cc -DDESTLIB=\"/dms/\" -DSERVER_PATH=\"/dms/dmsd\" -I -O   -c -o compute.o
compute.c
compute.c: In function 'read_radii':
compute.c:343: warning: incompatible implicit declaration of built-in
function 'exit'
compute.c: In function 'assign_radius':
compute.c:393: warning: incompatible implicit declaration of built-in
function 'exit'
compute.c: In function 'start_servers':
compute.c:474: warning: incompatible implicit declaration of built-in
function 'exit'
compute.c:478: warning: incompatible implicit declaration of built-in
function 'exit'
compute.c:489: warning: incompatible implicit declaration of built-in
function 'execl'
compute.c:491: warning: incompatible implicit declaration of built-in
function 'exit'
compute.c:499: warning: incompatible implicit declaration of built-in
function 'exit'
compute.c:514: warning: incompatible implicit declaration of built-in
function 'exit'
compute.c: In function 'get_server':
compute.c:666: warning: incompatible implicit declaration of built-in
function 'exit'
compute.c:680: warning: incompatible implicit declaration of built-in
function 'exit'
compute.c:703: warning: incompatible implicit declaration of built-in
function 'exit'
compute.c: In function 'neighbors':
compute.c:1071: warning: incompatible implicit declaration of built-in
function 'exit'
compute.c: In function 'probes':
compute.c:1149: warning: incompatible implicit declaration of built-in
function 'exit'
compute.c: In function 'contact_surface':
compute.c:1240: warning: incompatible implicit declaration of built-in
function 'exit'
compute.c: In function 'torus_surface':
compute.c:1264: warning: incompatible implicit declaration of built-in
function 'exit'
compute.c: In function 'probe_surface':
compute.c:1289: warning: incompatible implicit declaration of built-in
function 'exit'
cc -DDESTLIB=\"/dms/\" -DSERVER_PATH=\"/dms/dmsd\" -I -O   -c -o fwritev.o
fwritev.c
cc -DDESTLIB=\"/dms/\" -DSERVER_PATH=\"/dms/dmsd\" -I -O   -c -o input.o
input.c
input.c:37:17: error: pdb.h: No such file or directory
input.c: In function 'read_pdb':
input.c:70: error: 'pdb_record' undeclared (first use in this function)
input.c:70: error: (Each undeclared identifier is reported only once
input.c:70: error: for each function it appears in.)
input.c:70: error: parse error before 'r'
input.c:72: error: 'pdb_residue' undeclared (first use in this function)
input.c:72: error: 'resp' undeclared (first use in this function)
input.c:85: error: 'r' undeclared (first use in this function)
input.c:87: error: 'PDB_END' undeclared (first use in this function)
input.c:88: error: 'PDB_UNKNOWN' undeclared (first use in this function)
input.c:89: error: 'PDB_TER' undeclared (first use in this function)
input.c:91: error: 'PDB_HETATM' undeclared (first use in this function)
input.c:95: error: 'PDB_ATOM' undeclared (first use in this function)
input.c:97: error: dereferencing pointer to incomplete type
input.c:104: error: dereferencing pointer to incomplete type
input.c:104: error: dereferencing pointer to incomplete type
input.c:151: warning: incompatible implicit declaration of built-in function
'exit'
input.c: In function 'read_wanted':
input.c:270: warning: incompatible implicit declaration of built-in function
'exit'
input.c:278: warning: incompatible implicit declaration of built-in function
'exit'
input.c:297: warning: incompatible implicit declaration of built-in function
'exit'
input.c:301: warning: incompatible implicit declaration of built-in function
'exit'
input.c:306: warning: incompatible implicit declaration of built-in function
'exit'
input.c:313: warning: incompatible implicit declaration of built-in function
'exit'
make: *** [input.o] Error 1

Any suggestions as to what I am doing wrong?


Sam Watson
Department of Chemistry and Biochemistry
Long Island University, Brooklyn
Brooklyn, NY 11201
Voice: 718-488-1027; FAX: 718-488-1465
email: swatson at liu.edu