[Dock-fans] DMS replacement
Christian Schudoma
schudoma at mpimp-golm.mpg.de
Thu Oct 2 05:48:57 PDT 2008
Hi,
I think WriteDMS is a very nice new feature for Chimera. Does it run
with the same default parameters as the original dms?
Also, I wonder if it would be possible to integrate WriteDMS into the
DockPrep tool? Maybe add an option there to run surface generation and
WriteDMS automatically when DockPrepping a molecule?
Thanks & best regards,
Christian
Eric Pettersen wrote:
> Hi all,
> The latest daily builds of Chimera now include a tool for writing
> DMS-format files, which should allow you to forgo compiling/running
> DMS yourself in preparation for docking. The tool is called Write DMS
> and is currently located in the Surface/Binding Analysis category of
> Chimera's Tools menu, though starting with tomorrow's builds it will
> be located in the Structure Editing category instead.
> To get a daily build of Chimera go to the UCSF Chimera Home Page
> <http://www.cgl.ucsf.edu/chimera/> and follow the "Daily Builds" link.
>
> --Eric
>
>
> Eric Pettersen
>
> UCSF Computer Graphics Lab
>
> http://www.cgl.ucsf.edu
>
>
>
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