[Dock-fans] Non spherical grid

[John J. Irwin]

Hi Francesco

Francesco Pietra wrote:
> For an elongated, big protein (which I want to be totally comprised)
> is it possible to build a parallelepiped grid instead of a spherical
> one? Should that result in fewer spheres.
>
>   

In all versions of DOCK I have used, grids are boxes with variable
length sides. I haven't ever seen support for spherical grids. Also, I
am unclear on what you have written, since spheres (for matching and
orientations) are generated before and independent of the grids.

John