[Dock-fans] Sphere_generation problem

Wenjing.Shi at lvh.com Wenjing.Shi at lvh.com
Wed Apr 15 07:13:30 PDT 2009


Hello Dr. Irwin,

I tried the way you suggested, but still got the same error message. I'm
feeling it's so hard to me. So I'm wondering whether there is any short-term
DOCK training (e.g. a week or shorter) provided. If there is, could you please
give me information about it?

Thank you very much. I look forward to getting back from you.

Sincerely,

Wenjing
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Date: Mon, 13 Apr 2009 11:40:43 -0700
From: John.J.Irwin[jji]@cgl.ucsf.edu
To: Wenjing.Shi
cc: dock-fans at docking.org
Subject: Re: [Dock-fans] Sphere_generation problem
X-HDT-HopCount: 1

try
rm -f OUTSPH
and try again


Wenjing.Shi at lvh.com wrote:
> Hello! After I installed dock6 and made test for sphere_generation, an error
> message appeared as following:
> $ make test
> # Cpmstruct sphere set in active site
> ../../..bin/sphgen
> open: 'new' file exists
> apparent state: unit 6 named OUTSPH
> lately writing direct unformatted external IO
> 6 [sig] sphgen 2368 _cygtls::handle_exceptions: Error while dumping state
> <probably corrupted stack>
> make: *** [sphgen] Segmentation fault <core dumpted>
> What does this mean? Is anything wrong with installation? Any suggestions?
> Thank you very much for your input.
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>
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Date: Mon, 13 Apr 2009 11:40:43 -0700
From: "John J. Irwin" <jji at cgl.ucsf.edu>
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Subject: Re: [Dock-fans] Sphere_generation problem
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