[Dock-fans] protein-protein-peptide docking

[Scott Brozell]

Hi,

I defer to John, but i note that there is user interest.
http://blur.compbio.ucsf.edu/pipermail/dock-fans/2009-March/001875.html

Please provide details on what you tried and why it failed.

thanks,
Scott

On Mon, Apr 20, 2009 at 12:24:12PM -0700, John J. Irwin wrote:
> 
> protein-protein and protein-peptide docking is a challenging problem,
> and one that is - in my view - not the main strength of DOCK.  I refer
> to you the CAPRI project, http://capri.ebi.ac.uk/ for a community-based
> evaluation of the current state of the art of protein-protein and
> protein-peptide docking methods.
> 
> Good docking
> 
> John
> UCSF DOCK Team
> 
> selva kumar wrote:
> > hello,
> >  i am interested in docking protein-protein and protein-peptide with
> > dock. even i tried to dock these two . i could not succeed. can any
> > one please tell me how to go for protein-protein and protein
> > -peptide docking using dock software.
> >  
> > what all changes has to be made in the parameter files so that the
> > protein-protein docking can be done without any problem.
> >  
> > thanks and regards,
> > selvaa kumar c