[Dock-fans] Help: Where is my GB/SA score?
thirsty
thirstymail at gmail.com
Tue Mar 17 19:31:06 PDT 2009
I have set the dock.in file as fowllow:
gbsa_hawkins_score_secondary yes
gbsa_hawkins_score_rec_filename abcd.mol2
gbsa_hawkins_score_solvent_dielectric 78.5
gbsa_hawkins_use_salt_screen no
gbsa_hawkins_score_gb_offset 0.09
gbsa_hawkins_score_cont_vdw_and_es yes
gbsa_hawkins_score_vdw_att_exp 6
gbsa_hawkins_score_vdw_rep_exp 12
grid_score_rep_rad_scale 1
but I have not receive the GBSA score, the fowllow is my dock.out file:
Initializing Library File Routines...
Initializing Orienting Routines...
Initializing Conformer Generator Routines...
Initializing Grid Score Routines...
Reading the energy grid from grid.nrg
Initializing Hawkins GB/SA Score Routines...
-----------------------------------
Molecule: inno-406_ligand-ch3.mol2
Elapsed time for docking: 67311 seconds
Anchors: 3
Orientations: 1500
Conformations: 618
Primary Score
Grid Score: -58.790798
vdw: -58.790798
es: 0.000000
Why not I get the GBSA Score?
Thank you!
GuanXin
2009.03.18
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