[Dock-fans] how to dock two proteins?

[Scott Brozell]

Hi,

On Fri, 20 Mar 2009, John J. Irwin wrote:

> May I suggest you look at http://capri.ebi.ac.uk/ for the current state
> of the art in protein protein docking?
>
> CAI Qixu wrote:
>> I want to use DOCK6.2 to find out whether the two proteins can
>> interact. How to do the docking of two proteins? I just know the
>> parameter "use_ligand_spheres" is necessary. Is there any tutorial?
>> such as the grid parameters?

No tutorial.  This is the state of my understanding:
http://blur.compbio.ucsf.edu/pipermail/dock-fans/2008-September/001719.html

Perhaps CJ Arthur can comment on his experience ?

Scott