[Dock-fans] [Fwd: Re: Your DOCK 6 license has been approved]

[Scott Brozell]

Hi,

On Tue, 31 Mar 2009, Stéphane Ransac wrote:

> My system is UBUNTU 8.1 (October 2008). I did all the updates.
> I have installed gfortran and g++ especially to compile DOCK, so I do not

> Starting installation of
> DOCK v6.2
> program dock at lundi 30 mars 2009, 13:19:13 (UTC+0200).
> 
> cd ../src/dock && make install
> make[1]: Entering directory `/home/ransac/dock6/src/dock'
> g++ -c  -O2 -o amber_typer.o  amber_typer.cpp
> amber_typer.cpp: In function ‘char* white_line(char*)’:
> amber_typer.cpp:15: error: ‘strlen’ was not declared in this scope
> amber_typer.cpp: In function ‘int assign_node(ATOM_TYPE_NODE&, int)’:
> amber_typer.cpp:66: error: ‘strtok’ was not declared in this scope
> amber_typer.cpp:66: error: ‘strcpy’ was not declared in this scope
> amber_typer.cpp:87: error: ‘strncmp’ was not declared in this scope
> amber_typer.cpp: In function ‘int check_type(const char*, const char*)’:
> amber_typer.cpp:125: error: ‘strstr’ was not declared in this scope
> amber_typer.cpp: In constructor ‘ATOM_TYPE::ATOM_TYPE()’:
> amber_typer.cpp:251: error: ‘INT_MIN’ was not declared in this scope
...

This looks like the known problem with incomplete header file includes
in DOCK 6.2.  Add the appropriate header includes per these
http://blur.compbio.ucsf.edu/pipermail/dock-fans/2009-January/001791.html
http://blur.compbio.ucsf.edu/pipermail/dock-fans/2008-September/001706.html

General advice on ubuntu:
http://blur.compbio.ucsf.edu/pipermail/dock-fans/2009-March/001828.html
http://blur.compbio.ucsf.edu/pipermail/dock-fans/2009-February/001819.html

Scott