[Dock-fans] Prepare Amber
Rahul Banerjee
rahul.banerjee at chemistry.msu.edu
Tue May 26 06:51:51 PDT 2009
I was trying to prepare input files for the Amber scoring. But the following files were not created using the script prepare_amber.pl :
Files associated with the ligand:
lig.1.amber.pdb
lig.1.gaff.mol2
lig.1.prmtop
lig.1.frcmod
lig.1.inpcrd
Files associated with the complex:
1lgu.lig.1.amber.pdb
1lgu.lig.1.prmtop
1lgu.lig.1.inpcrd
All the files associated with the receptor was created.
In the file amberized_ligand.1.out it was mentioned that:
"Running: $AMBERHOME/bin/divcon
sh: /opt/amber10/bin/divcon: No such file or directory"
Can you please help me to resolve this problem?
With best regards,
Rahul Banerjee
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