<html><head><style type="text/css"><!-- DIV {margin:0px;} --></style></head><body><div style="font-family:tahoma,new york,times,serif;font-size:10pt">Dear Lu,<br><br>Looks like you are trying to compile dock with mpi. Did you face the same issue while compiling a serial version of dock?<br><div> </div><font size="2"><span style="font-family: tahoma,new york,times,serif;">Regards<br>Sudipto Mukherjee<br></span></font><font size="2"><span style="font-family: tahoma,new york,times,serif;"><span style="font-style: italic; color: rgb(82, 83, 48);">Graduate Student, Robert C. Rizzo Lab</span><br style="font-style: italic; color: rgb(82, 83, 48);"><span style="font-style: italic; color: rgb(82, 83, 48);">Dept. of Applied Math & Statistics, Stony Brook University</span><span style="font-style: italic; color: rgb(82, 83, 48);"></span></span></font><div style="font-family: tahoma,new york,times,serif; font-size: 10pt;"><br><br><div style="font-family:
times new roman,new york,times,serif; font-size: 12pt;">----- Original Message ----<br>From: 鹿晶jinger.Lu <lujing1999@126.com><br>To: dock-fans@docking.org<br>Sent: Wednesday, October 17, 2007 2:09:03 AM<br>Subject: [Dock-fans] score.o error1<br><br>
<div>Hi, dock-fans , I am trying to install dock6.1 in linux and having some problems. <em>After configuring with gnu and using the "make all" command, the </em><i>installation runs for a bit. Then some error messages appear. The folowwing is the complete output from make all. </i></div>
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<div>Starting installation of <br>DOCK v6.1<br>at Wed Oct 17 11:55:53 CST 2007.</div>
<div>cd ../src && make install<br>make[1]: Entering directory `/home/qlli/tmp/dock6/src'<br>cd dock && make install<br>make[2]: Entering directory `/home/qlli/tmp/dock6/src/dock'<br>g++ -c -DBUILD_DOCK_WITH_MPI -DMPICH_IGNORE_CXX_SEEK -DMPICH_SKIP_MPICXX -I/home/qlli/qlli/Applications/mpich-1.2.7/include -O2 -o amber_typer.o amber_typer.cpp<br>g++ -c -DBUILD_DOCK_WITH_MPI -DMPICH_IGNORE_CXX_SEEK -DMPICH_SKIP_MPICXX -I/home/qlli/qlli/Applications/mpich-1.2.7/include -O2 -o base_mpi.o base_mpi.cpp<br>g++ -c -DBUILD_DOCK_WITH_MPI -DMPICH_IGNORE_CXX_SEEK -DMPICH_SKIP_MPICXX -I/home/qlli/qlli/Applications/mpich-1.2.7/include -O2 -o base_score.o base_score.cpp<br>g++ -c -DBUILD_DOCK_WITH_MPI -DMPICH_IGNORE_CXX_SEEK -DMPICH_SKIP_MPICXX -I/home/qlli/qlli/Applications/mpich-1.2.7/include -O2 -o conf_gen.o conf_gen.cpp<br>g++ -c -DBUILD_DOCK_WITH_MPI -DMPICH_IGNORE_CXX_SEEK -DMPICH_SKIP_MPICXX
-I/home/qlli/qlli/Applications/mpich-1.2.7/include -O2 -o dock.o dock.cpp<br>g++ -c -DBUILD_DOCK_WITH_MPI -DMPICH_IGNORE_CXX_SEEK -DMPICH_SKIP_MPICXX -I/home/qlli/qlli/Applications/mpich-1.2.7/include -O2 -o dockmol.o dockmol.cpp<br>g++ -c -DBUILD_DOCK_WITH_MPI -DMPICH_IGNORE_CXX_SEEK -DMPICH_SKIP_MPICXX -I/home/qlli/qlli/Applications/mpich-1.2.7/include -O2 -o library_file.o library_file.cpp<br>g++ -c -DBUILD_DOCK_WITH_MPI -DMPICH_IGNORE_CXX_SEEK -DMPICH_SKIP_MPICXX -I/home/qlli/qlli/Applications/mpich-1.2.7/include -O2 -o master_score.o master_score.cpp<br>g++ -c -DBUILD_DOCK_WITH_MPI -DMPICH_IGNORE_CXX_SEEK -DMPICH_SKIP_MPICXX -I/home/qlli/qlli/Applications/mpich-1.2.7/include -O2 -o orient.o orient.cpp<br>g++ -c -DBUILD_DOCK_WITH_MPI -DMPICH_IGNORE_CXX_SEEK -DMPICH_SKIP_MPICXX -I/home/qlli/qlli/Applications/mpich-1.2.7/include -O2 -o score.o score.cpp<br>score.cpp: In method `string
Energy_Score::output_score_summary <br>(float)':<br>score.cpp:407: `fixed' undeclared (first use this function)<br>score.cpp:407: (Each undeclared identifier is reported only once for <br>each function it appears in.)<br>make[2]: *** [score.o] Error 1<br>make[2]: Leaving directory `/home/qlli/tmp/dock6/src/dock'<br>make[1]: *** [dock6] Error 2<br>make[1]: Leaving directory `/home/qlli/tmp/dock6/src'<br>make: *** [install] Error 2<br></div>
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<div>Thanks for your time and help.</div><span>--<br>jinger.Lu<br>TEL:13488692141<br>QQ: 58187898<br>MSN:zhishang_feng@hotmail.com<br>email:lujing1999@126.com<br></span>
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