[Zinc-fans] About molecular descriptors and clustering.
yasset perez riverol
yp_riverol at yahoo.com
Fri May 11 13:07:04 PDT 2007
Hi, I've been doing virtual screening using ZINC
version 6. I've some quetions about the structure and
functionality of this database.
1. First of all, in previous version the database
should present some of redundance compounds.
a. diferent ZINC identifier and same mol2.
b. diferent ZINC identifier and diferent mol2
but same structure. What program you
are using to identified same structure of
different vendors.
2. What program you are usinfg to calculate
molecular descriptors, and which molecular
descriptors you are calculating.
3. What program do you used to clustering the
database and, what molecular descriptor used to
calculate the tanimoto coefficient.
Thanks in advance
Yasset
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