[Zinc-fans] Usual and Ref Discrepency

T. Andrew Binkowski abinkowski at anl.gov
Thu Jul 16 14:12:32 PDT 2009


Hi John,

If you download the leads-now (subset 21) for the "usual" molecules  
you will find ZINC00403313 listed in 21_p0.0.mol2 file downloaded from  
the script.  If you use the Search on the website and enter the zinc  
id, the results show that there is only a ref molecule available for  
download.

Here's the result:



Download:      Show Detail?
ZINC ID
Supplier information; Representations
Properties:xLogP, ap & p desolvation, HBD,HBA,Charge,Mwt,NRB
Annotations; Similarity	Structure

Click for quick 3D display
403313

#1


Aurora Feinchemie: kasf-120716
PubChem: 4589027
ref: mol2, SDF, SMILES, flexibase
0.02,-0.86,-15.47,1,4,0, 211.242, 2



In general, should there be at least 1 usual molecule for every  
reference molecule?  I find that this is not the case from my  
downloaded sets and am wondering if there is a reason for this.

Thanks,
Andrew
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://blur.compbio.ucsf.edu/pipermail/zinc-fans/attachments/20090716/ebeedcc7/attachment.html 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: flag.jpg
Type: image/jpeg
Size: 369 bytes
Desc: not available
Url : http://blur.compbio.ucsf.edu/pipermail/zinc-fans/attachments/20090716/ebeedcc7/attachment.jpg 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: discuss.jpg
Type: image/jpeg
Size: 509 bytes
Desc: not available
Url : http://blur.compbio.ucsf.edu/pipermail/zinc-fans/attachments/20090716/ebeedcc7/attachment-0001.jpg 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: similar4.png
Type: image/png
Size: 2976 bytes
Desc: not available
Url : http://blur.compbio.ucsf.edu/pipermail/zinc-fans/attachments/20090716/ebeedcc7/attachment.png 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: go_sea2.png
Type: image/png
Size: 3197 bytes
Desc: not available
Url : http://blur.compbio.ucsf.edu/pipermail/zinc-fans/attachments/20090716/ebeedcc7/attachment-0001.png 
-------------- next part --------------
A non-text attachment was scrubbed...
Name: depict4.pl
Type: image/gif
Size: 839 bytes
Desc: not available
Url : http://blur.compbio.ucsf.edu/pipermail/zinc-fans/attachments/20090716/ebeedcc7/attachment.gif 


More information about the Zinc-fans mailing list